The root of the dispute was a new system initiated by New Zealand Football regarding players' expense sheets, and consequent reimbursements.
United chairman Dave Lamont said all expenses were now up to date, and that any new system of paperwork always needed time to run smoothly.
Coach Fleming agreed but said, as the person who had to front up to players regarding reimbursements, he thought the timing of last week's confrontation was not good.
''We have a few Christchurch-based players and it was not the best for them to feel aggrieved just before a game when they opened their envelopes, and personally I was embarrassed and angry that the situation occurred,'' Fleming said.
''There were discrepancies, but now we all know what is required with the new expenses system, there should be no problem.''
With the transfer window opening soon, and Otago likely to lose at least Nathan Knox to Australia, it is important the players who have shown interest in signing for United see the club as a well-run entity.
''It's hard enough to attract new players south, so we need to be seen as efficient at all levels if we are to mount a serious challenge for a top-four playoff spot this season,'' he said.